rs230052723 SNP Detail

Summary

• ID
  rs230052723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTGTC TCATGCCCTT
  ACTGCCGTAT TTGGAAATGT TACTTCATAT CGGCCTGATC AAGTTTCTCT ACGTTTGCTG
  TCTCATGCTT TTCAGTTGAA CTCAGCTTCT ATTTTTAACT TCAATTGAGC GGGGTTAAAA
  GGAACGTCTC GCCCCCTGCT GGCGCCCGTG GTCCCGGGAA GACCGGACAA AAGCCACCAC
  K
  TGGCTCACAT CCTGGGCTCA GTTTTCTTAG GAACCCAGAG CCCCATGCTT GCTAGGCAAG
  GGCCCCAACC CTGATCAACG CTTTAGCAGG CGTCCTTTTG CTCAAGTCTA GAGCGTCACT
  GGTGCCAACT CTCCAACACA GGGAGGAATT GGCTTTGCTT AATTTTGCTG CAGAGTGGGC
  TGGCCCTGCT AAATCCAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372700264	MGP_WTSI_7_117307868	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230052723					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372700264	MGP_WTSI_7_117307868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763561 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	within coordinates
Rr653199	regulatory region 653199	1068 bp distal
Rr653200	regulatory region 653200	1089 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	34 bp distal
Rr653203	regulatory region 653203	564 bp proximal
Rr653204	regulatory region 653204	571 bp proximal
Rr653205	regulatory region 653205	619 bp proximal
Rr653206	regulatory region 653206	642 bp proximal
Rr653207	regulatory region 653207	1696 bp proximal
Tssr2367	transcription start site region 2367	527 bp downstream
Tssr2368	transcription start site region 2368	1872 bp downstream
Tssr68492	transcription start site region 68492	33 bp downstream
Tssr74253	transcription start site region 74253	514 bp downstream
Tssr74254	transcription start site region 74254	1998 bp downstream