rs229998720 SNP Detail

Summary

• ID
  rs229998720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGACCAA GCTGCCAACC
  TGGGCAGTGG GTGTTGGCCC ATCTCATCAT GTGAGTGCTC CCAAAGCATT AAGTCAAAGT
  TGACGAGGAC TCTGGGATCC AGGCCAGTGC TATGAGCTAG TGCTCTTTTT AGTCATAACA
  GAACCTTTTA TATCATCTTT TTAAAAAATG TACAAAAAAG TACCACAAAA TGACATGTCC
  Y
  GACAGTGCAG GAAGACATAT ATCGACTTTT GATACATTTA ATGTTTCTAA ACACAAAGTC
  CAGTTGCACA GCCAAAAGGT GGTTATCTTT CAGCTCTGAG TGGCTGATGT GTTAGTGACT
  GTAGAAAAGG GTAGCAATAG GCAGTGAGAA CAGTCCTGGG TCCGGGAGCC CCGAGGCACT
  GGAAGTCAGA CCATGTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357060598	MGP_WTSI_3_14873098	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229998720					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357060598	MGP_WTSI_3_14873098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938158 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	717 bp downstream
Rr397608	regulatory region 397608	1304 bp upstream
Rr573713	regulatory region 573713	1329 bp distal
Rr573714	regulatory region 573714	1371 bp proximal
Rr573715	regulatory region 573715	1467 bp proximal
Tssr28448	transcription start site region 28448	1552 bp downstream
Tssr28449	transcription start site region 28449	1488 bp downstream
Tssr28450	transcription start site region 28450	1445 bp downstream
Tssr28451	transcription start site region 28451	1428 bp downstream
Tssr28452	transcription start site region 28452	1406 bp downstream
Tssr28453	transcription start site region 28453	1393 bp downstream
Tssr28454	transcription start site region 28454	1381 bp downstream
Tssr28455	transcription start site region 28455	1363 bp downstream
Tssr28456	transcription start site region 28456	1326 bp downstream
Tssr28457	transcription start site region 28457	1264 bp downstream
Tssr28458	transcription start site region 28458	1067 bp downstream
Tssr28459	transcription start site region 28459	1030 bp downstream
Tssr28460	transcription start site region 28460	944 bp downstream
Tssr28461	transcription start site region 28461	888 bp downstream
Tssr28462	transcription start site region 28462	851 bp downstream
Tssr28463	transcription start site region 28463	800 bp downstream
Tssr28464	transcription start site region 28464	759 bp downstream
Tssr28465	transcription start site region 28465	620 bp downstream
Tssr32653	transcription start site region 32653	1294 bp upstream
Tssr32654	transcription start site region 32654	561 bp upstream