rs229962082 SNP Detail

Summary

• ID
  rs229962082
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105172939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTGCTC AAAATGTGCA
  AGGCTCTGAG TTCAATCTGT ATTACTATAA GAAAGAAAAA GAAAAAATAG TCAGATGTTG
  AAGATATCTG TAAACACGTG AGACGATGCA ATCTTTCTTA AGAATTTTTA TGTAGTTTTT
  AAATGTATAA CTATCATTTA GATTGACATG TAATAGATTA GTCATGTATA ATTTAATTAA
  W
  ATATAATCTT TCTAAATTAT AATTTATAAT ATAGTAAGCA TTACTAGATA CGACACATTC
  TTTGGAATAA TCAGGCTTTG TTTCATTATG TTTTAAATTT ATTACATGCA TGTACGTATG
  TATGTTTGTA TGCATGTATG TACGTTCCTC AAAGCATGTG TGGAGGCCAG AAGACAAATT
  ACAGGTCTTG GTTTTCTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243577	CHEV_4_104988347	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229962082					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105172939 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596595	regulatory region 596595	304 bp distal
Rr596596	regulatory region 596596	843 bp proximal
Rr596597	regulatory region 596597	1317 bp proximal