rs229913076 SNP Detail

Summary

• ID
  rs229913076
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147952493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACACAAA CCCCACCCCC ACCCCTTCTC CGGCCAGCTT
  TGGTCCTCAA AAATTATACT CAGGGGCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  C
  TCTCAAAGAT TTATTTATTT GTTCGGACAC ACCAGAAGAA GGCGTAGGAT TCCATTACTG
  ATGGTTGTGA GCCACCATGT GGTTGCTGGG AATTGAACT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321415387	CHEV_4_147242145	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229913076					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147952493 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			293 bp proximal
Fv1	Friend virus susceptibility 1			943 bp upstream
Miip	migration and invasion inhibitory protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr398850	regulatory region 398850			556 bp upstream
Rr604509	regulatory region 604509			868 bp distal
Rr604510	regulatory region 604510			within coordinates
Rr604511	regulatory region 604511			28 bp proximal
Rr604512	regulatory region 604512			437 bp proximal
Tssr40232	transcription start site region 40232			751 bp upstream
Tssr40233	transcription start site region 40233			794 bp upstream
Tssr44551	transcription start site region 44551			433 bp downstream
Tssr44552	transcription start site region 44552			572 bp downstream
Tssr44553	transcription start site region 44553			595 bp downstream