rs229894058 SNP Detail

Summary

• ID
  rs229894058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA ACATAAATAA
  AAAAATATAA TGAACATTTA AAAGAATCAC CTTGCTCTGC CTCCCCTTAC TGTTGGGGCC
  TGTGTATTGG CTTCCAGACA ATTCCACTAG ACTCTTCCCT GGAACCTAGC AACAGCTTAC
  ATCATCACCT GCTGCCAGGT GCGAGCCAAC CTGGCATATG AGAGGGACTG CTCATCTCCC
  Y
  GCCTCCCCCC TTGCCATCTC TGTCCTTCCC TTTTCCAGAT CCCCCTCCCT TTACTTCTCC
  TGCAATAAAT CTTTATTCTA GGCTTGTCAG TGGGTGTGAT TCCTGGGGGT GGGGGTGGGG
  GCATCTTGGC AGGGCCTTCT GAGGTGCTCC CTCCCCCTCC TGCTGCAATA TACCACGTTA
  CACAGCATAA CACTGTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363423237	MGP_WTSI_4_137323998	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229894058					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363423237	MGP_WTSI_4_137323998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1657 bp upstream
Rr602708	regulatory region 602708			1668 bp distal
Rr602709	regulatory region 602709			1424 bp distal
Rr602710	regulatory region 602710			745 bp proximal
Rr602711	regulatory region 602711			1550 bp proximal
Tssr44134	transcription start site region 44134			1639 bp upstream
Tssr44135	transcription start site region 44135			1617 bp upstream
Tssr44136	transcription start site region 44136			1582 bp upstream
Tssr44137	transcription start site region 44137			1580 bp downstream
Tssr44138	transcription start site region 44138			1611 bp downstream
Tssr44139	transcription start site region 44139			1865 bp downstream
Tssr44140	transcription start site region 44140			1879 bp downstream
Tssr44141	transcription start site region 44141			1896 bp downstream
Tssr44142	transcription start site region 44142			1905 bp downstream
Tssr44143	transcription start site region 44143			1921 bp downstream
Tssr44144	transcription start site region 44144			1947 bp downstream
Tssr44145	transcription start site region 44145			1972 bp downstream