rs229871315 SNP Detail

Summary

• ID
  rs229871315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103204060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaggaaaat acctaataaa atatttttaa
  aaaaGGAAAA AAAATCCAAT TGAGTTCCTC TACTCACATT CACAGATGAG GAAGGTGaca
  aaaaaccaaa aacaaaacaa acaaacaaac aaacaaacaa aAACAGTAGG ttatagaacc
  R
  taagtgttgg gcccagggag gaaaactgga gctaacttaa ctcaacttct ccttttacag
  gcagggaaac tagagtccaa agtggtgatg tgatttacct aatagcatac ttcgttagta
  gcaagactcc tgacccttgt cttccAGGTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321236681	CHEV_4_103019468	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229871315					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103204060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			445 bp distal
Rr596393	regulatory region 596393			534 bp distal
Rr596394	regulatory region 596394			36 bp proximal
Tssr38109	transcription start site region 38109			1840 bp upstream