rs229866620 SNP Detail

Summary

• ID
  rs229866620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132294089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTCTG TCTATCTGTC
  TGTCCATCTA TCTTATCTAT TTATCTATCT TACAGTTTTC CTTCCCTCTA CTCCTCCCAG
  TTCCTTCCCA TCTGTTTGTT CTTTTATTGG GAATCAGAGA CATCCCCACG CTTGGCCTGC
  AGACAGGTCT TCCTGAAGGC CATTGACCCC CTTCTTTTCT ATACAGGTCC CCTCAGTGGA
  W
  GGAGGTTTGG GCTCAGGATG GAATGAGAGC TGAGCTAGAG TCCAGGAGCA CAGATGGGCT
  TCAGGGACAG GAGTCTTTAC TGAGTGTGGA ATCAGTTCCC TAGATCAGAG GCTAGCCCCC
  AGCACAGCTG CTCTGAGCAG CCACTTAGAA TTGTGACGAG AGTGGAAGAA GCTTCCATGT
  GTATTTGTGT GGGAGTGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363296997	MGP_WTSI_4_132122693	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229866620					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363296997	MGP_WTSI_4_132122693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132294089 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601019	regulatory region 601019	1266 bp distal
Rr601020	regulatory region 601020	533 bp proximal
Tssr39389	transcription start site region 39389	1410 bp downstream
Tssr39390	transcription start site region 39390	1544 bp upstream
Tssr39391	transcription start site region 39391	1631 bp upstream
Tssr39392	transcription start site region 39392	1719 bp upstream
Tssr39393	transcription start site region 39393	1800 bp upstream
Tssr39394	transcription start site region 39394	1827 bp upstream
Tssr39395	transcription start site region 39395	1882 bp upstream
Tssr43688	transcription start site region 43688	686 bp downstream
Tssr43689	transcription start site region 43689	713 bp downstream