rs229862916 SNP Detail

Summary

• ID
  rs229862916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115676015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCACCA ACCACATGAA
  CACCCATCTC AGTCAGACAG GGGGAGCTAT TGAGCACACA CCCCAGGGCT GATCACCAGG
  GACATGGTCC ACATTCAGGA ACTGAACCAT GACCCGGAGT TAAGAGCCTA CAGTGGTTTT
  TGTCTTTTGT TTGTTTGTTT TGTTTCGGTT TTTTTAGTGG GTGGTTGTTT TTTGTTTTGG
  R
  CTTTTAAAAA AGATTTATTT ATTCTATTTT ATGTATATGA ATACACTGTA GCAGTCTTCA
  GACACACCAG AAGAGGGCAT CCGATCCCAT TACAGATGGT TGTGAGCCAC CATGTGATTA
  CTGGGAATTG AACTCAGGAC CTCTGGAACA GCACTCAGCG CTCTTAATTA CTGAGCCATC
  TCTCCAGCTG CCCTACAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369757921	MGP_WTSI_6_115649072	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229862916					SNP	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369757921	MGP_WTSI_6_115649072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115676015 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	within coordinates
Rr637027	regulatory region 637027	661 bp distal
Rr637028	regulatory region 637028	61 bp distal
Rr637029	regulatory region 637029	150 bp distal
Rr637030	regulatory region 637030	63 bp proximal
Rr637031	regulatory region 637031	1782 bp proximal