rs229844147 SNP Detail

Summary

• ID
  rs229844147
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACCCAA AGCTTGCAAG
  TGACACCTGG CTGCCACTAG GCTCAGTGAC AGAGGTGGGC TCCTGGGTCC ATTCCCAGCA
  TCCAGGAAGG GAAAACACAA ATTGGAACGT CCGAATGTTT ATTTTTCAGT TTCATTTTTT
  GTTTTTCTGC GCTTTGGAGG AATTCACTCA AACCCACTGC GGGCTTCCTC AACGTGAGAA
  W
  CATCCTTCCT GGAACCCCCG TGGCTACAGA AGTCACGCTC AAATTCTCTC AGGCTTCATG
  TTGCAGTTCC TCGGTCACCT CGGGAACGGG AGTGGGGTGC CAAGTGGCCT TTAGACCTAA
  TCCAGGGCCC TTGTCCATGG CAGACACGTG CATTTACTGC ACCGCCCTGT GCAGCGGACC
  AAAGGGACTG ACAGAATGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359482662	MGP_WTSI_3_121425826	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229844147					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359482662	MGP_WTSI_3_121425826	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	58 bp proximal
F3	coagulation factor III, tissue factor	629 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1814 bp distal
Rr584148	regulatory region 584148	989 bp distal
Rr584149	regulatory region 584149	within coordinates
Rr584150	regulatory region 584150	163 bp distal
Rr584151	regulatory region 584151	596 bp proximal
Rr584152	regulatory region 584152	640 bp proximal
Rr584153	regulatory region 584153	812 bp proximal
Rr584154	regulatory region 584154	824 bp proximal
Tssr31453	transcription start site region 31453	607 bp upstream
Tssr31454	transcription start site region 31454	648 bp upstream
Tssr31455	transcription start site region 31455	672 bp upstream
Tssr31456	transcription start site region 31456	693 bp upstream
Tssr31457	transcription start site region 31457	1903 bp upstream
Tssr35426	transcription start site region 35426	487 bp downstream