rs229840740 SNP Detail

Summary

• ID
  rs229840740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129185267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAATGAT GGAGAAAAGC
  TATTCAGCAA GATTCGCAAC ATTAGTGTTT GGAGTCCATA CGCATAGATT GTATGTGTGC
  ACACACATAT GATTCTGTAC ACATACAGAC TGATTCTGAA CTCTCTCTGC TGGTGAGAAT
  GACCCGGAAC CTCTGATTCT CCTGCCTCTA CCTCCTGAGT GTTGAGGTTA CAGGAATAGG
  Y
  GCGTACTATC TACCACAGCA GGTTTTATGT GGTGCTAGGG ATCAAGGCCA AGACCTCCGA
  CATGTTCCAT GAGCACTCTA CCCACTGAGC TGCGGCCTCA GCTATTACCT GTGTGTGTTT
  GTGTGTTTGC ACAATGTGTG CGCGTGTGTA GAGGCCAGAG GTCAATTTTG TATGTCCTCA
  ACGGTTTTTC ATAGGATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311649	CHEV_4_128968718	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229840740					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129185267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1929 bp proximal
Sync	syncoilin	Intron