rs229825347 SNP Detail

Summary

• ID
  rs229825347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76236630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTTTGA GCCAAATACG
  TTGCCTTTCA ACCTTTGAAA TCCACTTTTC TAGAGTTGAA TCCTCCCCAT TGTTATCTAG
  GGTCTCTCCT GAACTGGACA GCACCTTCCC ATGAGTGCAG ATCATATATT TCCTAGGTTC
  TAACCTTTCA TGATGCTTAC AGTACTTTTC CTTCCCCAGT CTCAATCCTC ACTCCTTTTT
  Y
  TTTTTTTTTT GGTCTATATC CACATCTTGT TCTCCTTGTA CCATATTCCA GTAAGGCAAA
  AGCTGTATTT TAACAAAAAC CTGAATCTGA TTTTTTGAGG GCACAGAGAA GACATTTGCT
  GACAGAATAT CACTTTCAAA ATATATATGG TGATAAAAAT TTATATTTCT GACACAAATA
  CAGACATAAC AGGCTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss362031321	MGP_WTSI_4_75964297	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C	T	C	C	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229825347					SNP	C	C	C	T	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C	T	C	C	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362031321	MGP_WTSI_4_75964297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76236630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			188 bp distal
Rr594083	regulatory region 594083			347 bp distal
Rr594084	regulatory region 594084			1515 bp proximal