rs229803524 SNP Detail

Summary

• ID
  rs229803524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:42952321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCTAAA GGATGGCACG
  TGGCCACTCC TTCATATCCC CTCCCTTCAT ATCCTCCTCA GGTCCACTGA TGGAAGCAGG
  TTAAGAGTAG GAACCCTGGC TTGATGTCCT TGGGCCCCAC TTAGGAGTAT TAGCCTAGCA
  TGGAGTCAGA TCCTAAAATG TAAGGGTAGG TAGAGGAGGG GCTTGCAGCA AAGGGATTTA
  R
  GACATGGAGG TTAGTGTCCA TGGTCTCCTG GCACCTAGGC TTTAAGAAGG CCGTTTCTCT
  GATGGTTTTG TTCACTGCCT TTGGTGCTTA GGCAGCGCAG ACAAGCAGTC ACACTTCAGT
  GTGTAAATAC TGGGAAATGA GTAAAGGCAA TGTTACCCTG GCTGGGGGAG AGAGTGTCCC
  CCTGCTAACG AGGGTGTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361308131	MGP_WTSI_4_42965193	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229803524					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361308131	MGP_WTSI_4_42965193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:42952321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14174	CpG island 14174			1653 bp distal
Dnajb5	DnaJ heat shock protein family (Hsp40) member B5			Intron
				Noncoding-Transcript-Variant
Rr590885	regulatory region 590885			1915 bp distal
Rr590886	regulatory region 590886			718 bp distal
Rr590887	regulatory region 590887			283 bp proximal
Tssr1154	transcription start site region 1154			504 bp upstream
Tssr36909	transcription start site region 36909			1876 bp downstream
Tssr36910	transcription start site region 36910			1846 bp downstream
Tssr36911	transcription start site region 36911			1829 bp downstream
Tssr36912	transcription start site region 36912			451 bp upstream
Tssr36913	transcription start site region 36913			473 bp upstream
Tssr36914	transcription start site region 36914			487 bp upstream