rs229797057 SNP Detail

Summary

• ID
  rs229797057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68954102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGCAAG GATACTTTCT
  GGTTTTCTTA TCTGAAGGAG AGTCTTCCCA CAAGAATCTG TTTGCTGCAG ACAGGAAAAT
  GCAGGCCCGC TGGTCCTGGC TAACGTCAGA GTTCCTCAAG TGATTTCAGC TGTAGTCATC
  CGCATACCAA CCCCACCTAA CTTGAGGCAG CCCTTCACTC TGTGAGAATT AGCACAAACT
  R
  TAACCCAGCA AATGGGTTTC ATGCCAGACA GTCATGGCAT ACAGTCTTAA TCTCAGCTTC
  TGGGGGCAGA AGTGTTGGTT CTCAGGAGTT AGTAGACAGT CTAGTCTACA GACCTAGTTC
  TAGGACAGTC AAGGCCACAC AGAGAAACCC TGTCTAGAAA CACACACACA CACACACACA
  CACTACCAAC AAAAAGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358314054	MGP_WTSI_3_68850691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229797057					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358314054	MGP_WTSI_3_68850691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68954102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1245 bp distal
Gm65005	predicted gene, 65005	402 bp downstream
Rr578119	regulatory region 578119	1637 bp distal
Rr578120	regulatory region 578120	1866 bp distal
Rr578121	regulatory region 578121	516 bp distal
Rr578122	regulatory region 578122	1405 bp distal
Rr578123	regulatory region 578123	within coordinates
Tssr29529	transcription start site region 29529	1682 bp downstream
Tssr29530	transcription start site region 29530	1633 bp downstream
Tssr33526	transcription start site region 33526	1795 bp upstream
Tssr33527	transcription start site region 33527	1770 bp upstream