rs229757909 SNP Detail

Summary

• ID
  rs229757909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132291261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaatctcct ctctgtattc tctcattcct
  cccatgcgct cctgtttaca tcagccgttc tccctccctc tacccctctc gccttctccc
  ctcctttcTG ACTCTCTTTC CCTCTCCTCG TGCCAACTGT TTGTTGCTTC TTTTGGTTCt
  Y
  tctgtgtgtc tctctgtgtc tctgtgtgtc tcCCTCTCCT CCCCCACCCC GCCCCTTTCC
  ACACCCCCTG TCTGACACCC TCTCTGTCCT TTGCTTGCTC TGCAGGAAAC CTCTGCAGTA
  CTGAGTCTGG CTGGCTCAGT CCGTGTGGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334503	CHEV_4_132119865	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229757909					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132291261 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	117 bp upstream
Rr601015	regulatory region 601015	within coordinates
Rr601016	regulatory region 601016	128 bp proximal
Rr601017	regulatory region 601017	154 bp proximal
Rr601018	regulatory region 601018	309 bp proximal
Rr601019	regulatory region 601019	1541 bp proximal
Tssr39381	transcription start site region 39381	469 bp downstream
Tssr39382	transcription start site region 39382	440 bp downstream
Tssr39383	transcription start site region 39383	357 bp downstream
Tssr39384	transcription start site region 39384	322 bp downstream
Tssr39385	transcription start site region 39385	213 bp downstream
Tssr39386	transcription start site region 39386	101 bp upstream
Tssr39387	transcription start site region 39387	132 bp upstream
Tssr39388	transcription start site region 39388	233 bp upstream
Tssr39389	transcription start site region 39389	1410 bp upstream