rs229699397 SNP Detail

Summary

• ID
  rs229699397
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90015674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACCATG TTCTTTTTAG
  TTAAGAATTT CCCTTCTCAG CCGGGCAGTG GTGGTACATA CCTTTAATCC CAGCACTTGG
  GAGGTAGAGA CAGGCAGATT TCTAAGTTTG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA
  GGACAGTCAG GGCTACACAG AGAAACCCTG TCTCGAAAAA AAAAAAAAAA TCCCTTTCTC
  K
  GGCTATAAGG ATGGCTCAGT GGTTAAGAGC ACTGACTGCT CTGCCAGAGG TCCTGAGTTC
  AAGTCCCAGC AACCATCTGT AATGGGAAAT AATGCACTCT TCTAGTGTGT GTCTGAAGAC
  AGCTGTAGTG TACTCATATA AATAAAAAAT AAATCCTAAA AAAAAAAAGA ATTCCCTTCC
  TCTTATTGAT ACCCTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397289471	MGP_WTSI_16_90219031	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	G	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229699397					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	G	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397289471	MGP_WTSI_16_90219031	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90015674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	1514 bp proximal
Rr519069	regulatory region 519069	1913 bp distal
Rr519070	regulatory region 519070	1090 bp distal
Rr519071	regulatory region 519071	475 bp distal
Rr519072	regulatory region 519072	1478 bp proximal
Rr519073	regulatory region 519073	1979 bp proximal
Rr519074	regulatory region 519074	1987 bp proximal
Sod1	superoxide dismutase 1, soluble	1976 bp upstream
Tssr139276	transcription start site region 139276	875 bp upstream
Tssr139277	transcription start site region 139277	1748 bp upstream
Tssr139278	transcription start site region 139278	1783 bp upstream
Tssr139279	transcription start site region 139279	1808 bp upstream
Tssr139280	transcription start site region 139280	1834 bp upstream
Tssr139281	transcription start site region 139281	1850 bp upstream
Tssr139282	transcription start site region 139282	1922 bp upstream
Tssr139283	transcription start site region 139283	1961 bp upstream