rs229680229 SNP Detail

Summary

• ID
  rs229680229
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129486835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGGCGG CATTCTCACC
  GCAGTTGTGC GCCCCCCGCT GGCACTCGTC AATATCTGTC CCAGGAGTCC GTGGGAAGAG
  AAAGGGGTGC AGGGAAGGGA AGGAAGGGTT ACGAATCCAC AGAGTCCAGC CGTATAGAAG
  GTTTCTTCAC CTGTGTGGTG CTTCATGTTC AGGGCCCTAT GCATGCTGGG GGGGGGGGGG
  S
  CTGTCATGAA TGCTAGAAAT AAAAGATTGC TAGGTCCATG GCTGCACACC TATTGCTGGA
  CTCCCGGGCT CCTGAAAGGC TTTCTTTTCA CTTGTAAGGA AAGACATCGA GACTTCTCCA
  GACCGAAGAT CGGTAAAGCA CCTCCAGCAA ATGGCATTTT ATATCCTAAA ACTCGGACTT
  CACTTTTGCA ACTAGAAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss359693247	MGP_WTSI_3_129396104	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs229680229					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359693247	MGP_WTSI_3_129396104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129486835 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585067	regulatory region 585067			154 bp distal
Rr585068	regulatory region 585068			463 bp proximal