rs229668071 SNP Detail

Summary

• ID
  rs229668071
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63131314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCGTTA AAAGCCCCTA
  TCACAGTCTT CCTTTATTAT CTCTGTTATC TTTGTACTAT TGGCAGAGGA CAAGAACAGG
  AATAGTTCAT GATAAAGTGA GAGTGGAGTC ACCCATCCAG ATGTGCCTCT CTACCCTAAG
  TTGCTCTTTC TGATTTGTGT TACAGTTTAT ATGTGTTCAG AATCACGTGT AATTTCTTTG
  W
  CCCTATCCAT TAACAGTGGC TCACTTCCCA AGCAGAGGCT TGCATACTGT AGGAGCCCTA
  TCCCCCTTTT GTTTTACAGC TTCTTTGGGC TGGAATATTT GGAGCACTGA TTATGTCCCA
  GATTCCAGGC TGGCGATGGG GTTATAGAGG CATCAGGACA GTGACAGCAC TGTGATGTGC
  GGATAAGTGT GGCTGTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321144708	CHEV_4_62874111	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229668071					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63131314 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	932 bp upstream
Cpgi14368	CpG island 14368	895 bp proximal
Rr593488	regulatory region 593488	599 bp proximal
Rr593489	regulatory region 593489	863 bp proximal
Rr593490	regulatory region 593490	1385 bp proximal
Rr593491	regulatory region 593491	1868 bp proximal
Tssr1192	transcription start site region 1192	947 bp upstream
Tssr37533	transcription start site region 37533	1011 bp upstream
Tssr37534	transcription start site region 37534	1057 bp upstream