rs229641343 SNP Detail

Summary

• ID
  rs229641343
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153430666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATTACAT AGTCTCCCAC CCAGATGCCT
  TGGCCAAAGG AACAAAAAGG AAGCCGACGC CAGGAAGAGA CGGGCGGGCT GAGGATGCGG
  CGGGACCGCG GCGGGCTCCA CGCCTCGGCG CACCCAGCAG GCGGAGCTCG CATGCGGCCC
  M
  CCGCCGAGCT GTTACCTTGA GGATGCAGGC CATGGCGCTA TGGATCGACC CTGTGGCTCG
  CTGCACCTCG GCCCCGCAGC TGGACCACTC CAGCCCACAT TCCCGCAGAG CGAGCCGGGC
  CGCGGGAGCT GCGCGCTCAG GCCCCACCCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321031063	CHEV_3_153387993	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229641343					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153430666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			1117 bp distal
Rr587740	regulatory region 587740			within coordinates
Rr587741	regulatory region 587741			135 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1116 bp downstream
Tssr36240	transcription start site region 36240			75 bp downstream