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rs229626149 SNP Detail
Summary
  • ID
    rs229626149
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:155381135 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTACACAAAC CACAGCAGAA
    GGTTAACCCT AGTTCATTAC CCACCCCTCC ACCCTCTTTT GTGTGTGAAC TTTTAGTGGA
    ACATAGCTGC ACCCACTGGC ACACAAACTA ACTGTGGCTT CTGAGTCACA ATGGCAGCAT
    TGAAGGCTGC AACAGAGGCG AACGTCCTTA AAAACTGAAA ATGTAGACTC TGGTCGTTTA
    Y
    AGGACATGTC TGTTAACCAT TTTAGTTGCT TCAGACCTCA AAAGAAATCT TTAATGGTCC
    TACCTAGTGG CACCTCCTAA ACCCATCTCC CTGCCCATTC CTAGAGGCGT CTTTTCTTGA
    GACCCCAGTT AACTTGTTCT GTTGCTTCCT ATGGGTTCAC AACAGAAGCC AAAGCCCGCC
    CTGTAGCACA GGGACCAGCC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321441576 CHEV_4_154670787 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs229626149 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:155381135 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Prkcz protein kinase C, zeta Intron
Noncoding-Transcript-Variant
Rr606443 regulatory region 606443 320 bp distal
Rr606444 regulatory region 606444 405 bp distal
Rr606445 regulatory region 606445 315 bp proximal
Rr606446 regulatory region 606446 612 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory