rs229626149 SNP Detail

Summary

• ID
  rs229626149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155381135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACAAAC CACAGCAGAA
  GGTTAACCCT AGTTCATTAC CCACCCCTCC ACCCTCTTTT GTGTGTGAAC TTTTAGTGGA
  ACATAGCTGC ACCCACTGGC ACACAAACTA ACTGTGGCTT CTGAGTCACA ATGGCAGCAT
  TGAAGGCTGC AACAGAGGCG AACGTCCTTA AAAACTGAAA ATGTAGACTC TGGTCGTTTA
  Y
  AGGACATGTC TGTTAACCAT TTTAGTTGCT TCAGACCTCA AAAGAAATCT TTAATGGTCC
  TACCTAGTGG CACCTCCTAA ACCCATCTCC CTGCCCATTC CTAGAGGCGT CTTTTCTTGA
  GACCCCAGTT AACTTGTTCT GTTGCTTCCT ATGGGTTCAC AACAGAAGCC AAAGCCCGCC
  CTGTAGCACA GGGACCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441576	CHEV_4_154670787	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229626149					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155381135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			320 bp distal
Rr606444	regulatory region 606444			405 bp distal
Rr606445	regulatory region 606445			315 bp proximal
Rr606446	regulatory region 606446			612 bp proximal