rs229622861 SNP Detail

Summary

• ID
  rs229622861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102340458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCTGGC TTCTGCATGC
  ATGTGATGGT GGGTAACCAC CCCCCCCAAC ACATACATGC ACACCATTCA CTCATCCACA
  TACACAATAT AGACATATTG TGTGTACACA TATATACACA TACATACACG TGGATAGAAA
  ATACTGAACT ACTAGCAATG GCACTTTTCT TCTTCTATCT ATGTTTTATA GAGCTTTCTT
  R
  TACTGCTTAT ATAATGCTTG AATCTAAAGA AGCCTAAACT TGAAATGTGT GTCCTGATCA
  AGGCAGAGAC AGGAAATGCC CTAGATAAAT GACACTGTTT ATGTGTTTGT TTCTACCATT
  GCGGGTTCCC TTTTCTTCCT GATTGTATTC TGGTTTGTGT GGTATATTCA TTTCACTTGT
  TAAAGCCCCC TTCAGTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321233782	CHEV_4_102155866	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229622861					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102340458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596248	regulatory region 596248			1865 bp distal
Rr596249	regulatory region 596249			1966 bp distal
Rr596250	regulatory region 596250			181 bp proximal
Rr596251	regulatory region 596251			1628 bp proximal
Rr596252	regulatory region 596252			1736 bp proximal
Rr596253	regulatory region 596253			1921 bp proximal