rs229591097 SNP Detail

Summary

• ID
  rs229591097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75789430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAAGAA GATTGCCATC
  CCAGAAAAGA AACAAGATCC AGGGTTGAGA CTGCAGAAGA GAAAGCTCTT CCCTGCCCAG
  CCCATACAGA GAAAATAAAT CATTTAAGAA GTTGAATTGT AAGCCGGGAG TTGGTGGTGC
  ATGCCTTTAA TCCCAGCACT TGGGAGGCAG AGGCAGGCAG ATCACTGAGT TCGAGTCCTG
  Y
  GTGGTCTACA GAGTGAGTTC CAGGACAGCC AGGGCTACAC AGAGAAACCC TGTCTCAAAC
  AAAACAAAAC AAAACAAAAC AAAACAAAAC AAAATTTACT TGCATAAAAT GGCACGGCTC
  CTGAGGTTAG CTCTGCCATC CAGAGCTGTG GCTGTGGTGA GATAAGCAAA GGAAGCGCCT
  TGGCACACAG TTTAAGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934549	MGP_WTSI_10_75416341	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229591097					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934549	MGP_WTSI_10_75416341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75789430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1739	CpG island 1739	798 bp proximal
Gm5134	predicted gene 5134	918 bp upstream
Gm40698	predicted gene, 40698	254 bp downstream
Rr402000	regulatory region 402000	1741 bp downstream
Rr434192	regulatory region 434192	1812 bp distal
Rr434193	regulatory region 434193	1594 bp distal
Rr434194	regulatory region 434194	520 bp proximal
Rr434195	regulatory region 434195	998 bp proximal
Tssr94163	transcription start site region 94163	925 bp upstream