rs229581634 SNP Detail

Summary

• ID
  rs229581634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52948541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAAGAGG CAGGGAAGGG
  GACGGGAGGA GAAAGGAGGG TAGCAGAAAG AGGAGAGAGG GTGAGAGGGG AGGTAAGGGA
  GTGGGGGGAA ACCCAGGAAA GAGGAAGAGG AAAAAGAGGA AGAGAAATGT CTTGAAAGAA
  GTTCCCAAAG GTTTGCAGCT GTTGGGAGAG GCTGGCAGGG GAGTAGCCTG CCTTCTTTCT
  Y
  TCTGGCTTTG CCCCCACGGA ATCCAGCAGC CTCGCATGGC GTGCCCAGCC TTCTCTTTCC
  TATGTCCACA CCCGTCATGC TCTCTGCCCT CCAAAGTGAC CACTTCTCAA GAGCCCCTTA
  AAGCTCATAG ACATCGCTCT CCCCATCTCT GAGGCTACTT CCCATCCTGG TCCTCATAAA
  GGCCGCGCGA ACACTGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357971138	MGP_WTSI_3_52845042	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229581634					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357971138	MGP_WTSI_3_52845042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52948541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	within coordinates
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	427 bp upstream
Rr576626	regulatory region 576626	within coordinates
Rr576627	regulatory region 576627	319 bp proximal
Rr576628	regulatory region 576628	474 bp proximal
Rr576629	regulatory region 576629	1018 bp proximal
Rr576630	regulatory region 576630	1033 bp proximal
Rr576631	regulatory region 576631	1335 bp proximal
Tssr29102	transcription start site region 29102	397 bp upstream
Tssr29103	transcription start site region 29103	510 bp upstream