rs229548233 SNP Detail

Summary

• ID
  rs229548233
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139908155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACATCTA CAACACCTAA
  GAAATTATAA AGCACAAAAT CCTTAGTGGC GGCAACTATG TTAATCTCTT GTTCTGCAAT
  TCCCAAGCAT TTTCTAATAA CCACGGCCAC TGCTTCTAAT AACCAAACGC CTGAGTGCGT
  AAGATAAACT CCCTTAGCTT GTTATTCAAA GAAAGGTCTT GGTTCAATGG CCCCCAATAA
  W
  CCTTCCCTTC CTCTCCTCGG TATAATTAAG TTGAACTCGG AGGAATCCCT ATGCCTTCTA
  CTTCAAAACA CCTCCAGTTT ACAGCTACTC GCCCGCCTCT CCAGCATCTT CACTGACTCA
  GTCCTAGCCA CCTCTACACT GACTGGATGC TACATGTCCC TCGGGACGCT AACCCGGGCT
  CTAACAGACT CAGGGAAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320528018	CHEV_2_139891971	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229548233					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139908155 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			81 bp proximal
Rr397340	regulatory region 397340			431 bp upstream
Rr566073	regulatory region 566073			within coordinates
Rr566074	regulatory region 566074			379 bp distal
Rr566075	regulatory region 566075			209 bp proximal
Rr566076	regulatory region 566076			515 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			388 bp upstream
Tssr26543	transcription start site region 26543			426 bp downstream