rs229531071 SNP Detail

Summary

• ID
  rs229531071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117454393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAGGAA TAATAATAAT
  AACAACAACA ACAATAACAG CAGGGGAGCA TGCCTAGGCT TTCAGCAATA TTTTATTTTT
  ATTTAAATGG TATCTACGCA ATGTGTCTGT GTGTGGACAT AATGTCTGTG TGTGCAGTGC
  TGGAGGGTTC AACAGAGGGA GTCAGATCCC TAGGAACCAG AGTTACAAGC GGTTGTGAGC
  Y
  GCCCAACATG GGTGCTGGGA ACTGAACTCT GGTTCTCTGC AAAAGCATCT CTCTCTCTCT
  CTCCCTCTCC CTCTCCCTCT CCCTCTCCCT CTCCCTCTCC CTCTCCCTCT CCCTCTCCCT
  CTCCCTCTCC CTCTCCCTCT CCCTCTCCCT CTCCCTCTCC CTCTCCCTCT CCCTCTCCCT
  CTCCCTCTCC TCCCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss369798934	MGP_WTSI_6_117427450	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs229531071					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369798934	MGP_WTSI_6_117427450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117454393 () rs orientation: forward

Symbol	Name	Function Class
Rr637326	regulatory region 637326	1781 bp proximal