rs229457053 SNP Detail

Summary

• ID
  rs229457053
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107590167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATACTT GGCTGTTGCT
  AGGTAGCTGT TGGGCGGAGC CTAGAAGAAA TGCTAACACC CCTGTGGCCA CAAGAGCAAT
  TATCCAGGGG TAGGAGGAAG TCTGGGGGAT GATGGGTGTG CTTGTCTTGA TGGTGGCCAC
  CATCAAAGCA CCAAATTACA TGTACACACT CGAGCACACA CACAAACACA CACACACTAG
  W
  TTAGAAGCCT GTTAACATGG TTAAGAAAAC TAAGAGTGTG TCTTGGTACA AAGTCATTGG
  TCGACACCTC GAGGCCAGTG GTGAGATGCC ACCATCCCCT CCCACACACG TTCCTGCAGT
  GATCAAAGAT TATGGAGTTC TCCCAAGCCC TTACCTGCCC CAGTCCCTCC TTGTTTATCA
  GGGTGGCTGG TGTGGAGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250564	CHEV_4_107405575	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229457053					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107590167 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	501 bp proximal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	356 bp proximal
Rr597051	regulatory region 597051	1164 bp distal
Rr597052	regulatory region 597052	within coordinates
Rr597053	regulatory region 597053	791 bp proximal