rs229415435 SNP Detail

Summary

• ID
  rs229415435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118128672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATTCTA AATCCTAAAC
  TCACTTTAAA TAACCTGTGT CCTCCCCAGG AAGAAAGCTC GGGACCCACC ACAATCTGTT
  CCTGGGGGGG GGAGGCTGAG CAACTCAGAG GGCCCAGTGC AGGCAGGGGC CAGGAAGTCA
  TGCAGGTGAC CCAAAAGTTC TGAACTCCTT TCTGCCTCTA CCACCCTCCC ACCCCCACCC
  Y
  GACCCCCGCC TCTGGAGAGA GGTGTGGATC TTTCCTAGTC TGTAGAATTT ACAAAGCCTA
  TCACTGTTGC CAATACCTGC CTGAGAGGAA GCCCCCTCCT CCAGGGTCTA CTGAGGTTAT
  CTCTTAACCC CTCCCCCACC CCAGTAGCTT CCAGCTCTGC ATCCCCTCCA TGGGACAAAC
  GGCTTGGCTG GCTGAACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362988685	MGP_WTSI_4_117944080	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229415435					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362988685	MGP_WTSI_4_117944080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118128672 () rs orientation: forward

Symbol	Name	Function Class
Ptprf	protein tyrosine phosphatase receptor type F	Intron
Rr598358	regulatory region 598358	883 bp distal
Rr598359	regulatory region 598359	654 bp distal
Rr598360	regulatory region 598360	550 bp distal
Tssr43045	transcription start site region 43045	1738 bp upstream