rs229405511 SNP Detail

Summary

• ID
  rs229405511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43891624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCCCAG CAGCCCATCA
  CTCAGGTCAG ACCAGACCAC GCAATCCATC GTGGAAGGAG GGAAACACAT GACTCAGGCG
  TCGTAGAGCA TGCAGCTTTC CCTTTGATGC CATGGCTCCT TGTGCACGCC CTAGAGTACC
  AGGGCCCCAT CAGAGAGCTA GGGCATCACA TGGTCCCTGG GACAGCCAGC AGACCCAGAA
  Y
  CTGGAGTTTG CCTCTCCCCA ACCCCAGGAG ACACGTTCAC TACCCACACC CCAAGAGGAC
  CTGTGCTATA AGTGTCCCAG CCTGACCTGG TCACCAGATG GGACAGAGCA GTGATGAACA
  ACAAGCCCTC CATCCTTTCT CTGCACACCT CCCAGGGCCT GACTCTGGGA TCTAGAAAAC
  TTTCTGGAAA TTTTGGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322939866	CHEV_9_43788410	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229405511					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43891624 () rs orientation: forward

Symbol	Name	Function Class
Gm10688	predicted gene 10688	850 bp upstream
Rr677493	regulatory region 677493	1064 bp proximal