rs229403977 SNP Detail

Summary

• ID
  rs229403977
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157169078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATATAAA ATGTTGGCAG AGACATCACA
  TAGAACACTC ATAAAGTTAA GTTTATATAA TTATTTAATT ACAGCATATA AGGCAATAAA
  ATTCAAATAA AAATTATCAG AAAAAACTAC AAATTAAGAA CATTGATATT ATGCAAAATA
  K
  TTTATGTAAG CATAATACTA AATTTATATG TAGCAAGTTA AAAGGTATAA TAACAGGTTT
  TATGATGAAA TACAAGCCTA AAGTGATCTA AAGGTTGGGA GTAAAGACGT CAGTAGTATT
  GTATTGCTAA CAAGATAAGT GATCCTGATA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320073847	CHEV_1_159271639	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229403977					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157169078 () rs orientation: forward

Symbol	Name	Function Class
Rasal2	RAS protein activator like 2	Intron
Rr421371	regulatory region 421371	1141 bp proximal