rs229403906 SNP Detail

Summary

• ID
  rs229403906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156146974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAATGC CACATGAACG
  CAGATATCTT CTGATGATAT TGAAAGGACT GAGCCTGGAT GAGAAGAAGA TGATCTGAGA
  GGCTCACCCG GTTCCTGCTC ACATGCACAG GTATCTGACC CTATCTCTAG GTGGGATCCT
  AGATAGATCG TTCTTTCCGT CATCAAGAGC TGTGTGCTAC CAGGATGAAC AGAGAGATTC
  R
  GTCAGTCCTA GGTCAGAATG CTGAAGATCT AGTGTAACCT CCCACTCTTT CCCTCTCATG
  CACAGCAGAG GTTCAATATA GACTGAGCGT CAGAAAGAAG GAGCACTCTC AAACTGTAAA
  CTCAGCTCTC TTCCTTTCTT GTAGATGTAG CAGAGAACCT CCTGCCTTCA CAGTTGCTAT
  TCACACCAAT CCTAGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445022	CHEV_4_155436626	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229403906					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156146974 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	1757 bp upstream
Rr377474	regulatory region 377474	1371 bp upstream
Rr606657	regulatory region 606657	1355 bp proximal
Rr606658	regulatory region 606658	1840 bp proximal
Tssr40789	transcription start site region 40789	1822 bp upstream