rs229394909 SNP Detail

Summary

• ID
  rs229394909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152986245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATGCA TTTGACCTTG
  AGGTGAATGA TGACATTATT GTCCACATTT TCTTTGAATA AAGTTCTCTG CGTGGGTGGA
  TTCATGTATA GGTTTTACAG CCTTTATAAT TAGGGGATGT GAGAGTTAAG AAAAACAAAA
  ACAACCAAAG GGGGGAAAAA CAAAAACAAA ACAAAACAAA AAGCCAAACA AAAACCCCAA
  M
  CTAAGTACAA AATTAAATGT CCAAAGCAAA GGAAAAAAAA TCAAAGCAAC TGTTAGAGAC
  AGAGATTTGG GGGTCTTCTG TGGTCTCTTC CCTCACATGG GGGTGCATGT GAGTGAGGGG
  TACAGATGAC TAAGCCTCCT TAGCTCCAGC TGAATCTCTG CTGGAGAGTG GGTACACTAG
  CCCACCAGGG CTCACTCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321030473	CHEV_3_152943572	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229394909					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152986245 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			1520 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant