rs229391972 SNP Detail

Summary

• ID
  rs229391972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141980017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTTTT GCACCAAAGC
  ATATCTGTGT GCTAGCCTTT GAATATTCCC ACTTTTTGTA TTGTAATATA TCATGAAACA
  TGTTTATAAA ATTACAGTTC TCATAATATT TTTAAATAGC ACATCAAAAT ACTCTGGAAT
  GTTCTGCCCC ATTCTATTTC ATTTGGGGGC ATGCTGGCTA CATACCAAGT TCCAACACAA
  W
  AAAATAGTTT TTGTTTTTGA AGAAAAGGAA GTACTTACTA TTGACTCTAT CATCAAACAA
  TGTATACATG TGCCAAATTA TCAGAATGTA CCCCATAAAG ATTTACAAAT ATGTCCCAAC
  AAAATAAAAC TAAATAAATG CCATCTCCCA GCTATTACAC TGATTTCAGA ATCAACTGTG
  TTAATCACAG ACTGGAACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320999842	CHEV_3_141937220	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229391972					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141980017 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	845 bp upstream
Rr586404	regulatory region 586404	244 bp proximal
Rr586405	regulatory region 586405	848 bp proximal
Rr586406	regulatory region 586406	976 bp proximal