rs229363598 SNP Detail

Summary

• ID
  rs229363598
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137337922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGTCTT ACTTGAAGTG
  GGAGAAATGA GGAAGGAGGG AAGGACTCGA GCTACTTTTC TTGTCCTGAC CTCTGACATA
  ATTAGGGAGA AGCAACAGCT GGCTGGGGAA GCTGCAGAGG GCGGGTGTGG GGGGGAGGGG
  GAGGAGGATG ATGGCGGCGT TCCCCGTTGG ATGGAAGCTG CAGAGGGTGG GTGGGAGGAG
  G
  AGGAGGGTGG TGGCGTTCCC CGTTGGATGG AAGCTGCTAG CTCACAGAGC TGTGCTTTAC
  TTCCTAATCC CTAACCAGGA AGAACGATTA GAAGGAGACA ATCGATACTT CTGTGAAAAC
  TGTCAGAGCA AACAGAATGC TACACGGAAA ATCCGGCTTC TGAGCCTCCC TTGCACTCTG
  AACTTGCAGC TGATGCGTTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss363419653	MGP_WTSI_4_137166526	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs229363598					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363419653	MGP_WTSI_4_137166526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137337922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			479 bp distal
Tssr39763	transcription start site region 39763			60 bp upstream
Tssr39764	transcription start site region 39764			1339 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant