rs229302791 SNP Detail

Summary

• ID
  rs229302791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149088792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGCAC TTGACAAGTA
  TGGAGGTCAG TTCTCCTTCC ACCATCAAGT GCATTCAGGG ATCAGCCTCA GATCCCGAGG
  CTTGGTGGTC CTGATGCTGC TGCACCACCC TGCCACCCAG GCATCCACAC CAACGGTGCC
  TGTTCTCCAA CATCACAGAA GCAAGGAGCT ACTCCACCAT CATCATCACC ACCACCACCA
  Y
  CATCACCATC ACCATCATCA TCATCACCCA CTCGTCACCA CCCTCTTCCT CCTCTTCTTT
  TGAGAAAGGG TCTTGTATAA ACAGGCCTGT TTAAACATGG GGCTGGAGCC TGGACCTAAG
  CCTTCCCAAG CACTAGACAA GCACCCTACC AACTGAGCTA CCTGCACAGT CCTTCTGGTG
  GGAGTCCTCA GGCTTCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SWR/J
ss363627796	MGP_WTSI_4_148378444	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SWR/J
rs229302791					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363627796	MGP_WTSI_4_148378444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149088792 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42351	predicted gene, 42351			within coordinates
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604816	regulatory region 604816			1303 bp distal