rs229290445 SNP Detail

Summary

• ID
  rs229290445
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148858774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGGAG AAGCAAGCAA
  GGTGATACCT ACACATGAGC ACATACACAC TCATAGAGAA AGAAGGCACA GGAGGGTTGG
  GGGAAGGGAA GGGAAGAGGA AAGGGGAGGG AGAAGAAGCC TCCAGAAGCA AAGCTGCTAA
  CCCAGGGCTT GGATGGAGAT GAGCGGCTTA GACAGCATAC TGAGCCAGCA TGGGGGGGGG
  K
  GGGGGGGCTT GGGAGAGGCA GAGAGTTTCT GATTTTCGGG GGAGTCACAG TGAAGGCGAA
  GAGAAAGGGA ATTTATCTGG AAGGTTCAGG GCTGAGGTGA ATCCCTGGGG CATACGGACA
  GATGGATCCG TTTGTCATCC GTTTGTCATT CCAGAGAGTG AGGCCTATAA GAATCAACCT
  CAACCTCTGA GACCCAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BR/cdJ	C58/J	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss363623863	MGP_WTSI_4_148148426	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BR/cdJ	C58/J	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs229290445					SNP	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363623863	MGP_WTSI_4_148148426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148858774 () rs orientation: forward

Symbol	Name	Function Class
Rr604757	regulatory region 604757	1187 bp proximal