rs229250129 SNP Detail

Summary

• ID
  rs229250129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15168141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGCACT TTGTTCCCAG
  CTGTCTTGTT TTTGAGATGC ATGGTCTGGC TTACATAGCC TTGTGCATAT ATGGTCTGGA
  CAGTGGACCT GTGCATACTG TGAGTTCATA TGGGTGACTG CCATGCTGTG TCCAGAAGAG
  TCTTTCTTCT TGCAGTGACC TTGCTAGCCC TCTCTTCATC TTTTTGCCTC CTCTTCCCCA
  R
  TTACCCTTAA GCCTTGGGAA AGATAGATGT GATATAGATA TCTCTTTTAA AATTAGCATC
  TTAGTCTCTT ACTAACTACA TGCTGGCTAG TTGTATGTCA CTGTGTTATT CACCATCTTT
  GAAATGGAAG CTTCTCAGAC GAGTTTTGAG ATAAATTAGC ATATGTGTAT AAAGATAACT
  CATTAGGAGT CAATTTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321751536	CHEV_6_15118142	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229250129					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15168141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626644	regulatory region 626644			1494 bp distal