rs229240437 SNP Detail

Summary

• ID
  rs229240437
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116688763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGTGGA AAACACACAC
  ACACACACAC ACACACACAC ACAAGAGAGC AAGAAAGATT AATAGGCAGA TGGATATGGA
  CAATATATGC ATATATATTG TACATACACA ATATATATTG TACATATACA TATATGTGTG
  TATATAATGT ATATGCATGC ATAAAATGTT ATAATGAAAC TATCATTTTG TGCAATGATT
  W
  TATATATATA TAAATATATG TTCTGGGGGG GGTGGTCACA CCTGTAATCC CAGCACGCAT
  CAGACTGAGT CAGGTGATTG CCAGACATTC AAGTCCAGAC TACACAGAAA GTTCCAGAAC
  ATTCTGGACT ACCAAGTGAG ATCCTGTCTT AAAAGTCCCA CTGCTGCTGC AGCCACCTCC
  ACCCCAGCTT GAAAGAGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SWR/J	ZALENDE/EiJ
ss369779624	MGP_WTSI_6_116661820	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	A	A	A	A	A	T	T	T	A	A	A	T	A	T	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SWR/J	ZALENDE/EiJ
rs229240437					SNP	T	A	A	A	A	A	A	A	A	T	T	T	A	A	A	T	A	T	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369779624	MGP_WTSI_6_116661820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116688763 () rs orientation: forward

Symbol	Name	Function Class
Rr637245	regulatory region 637245	483 bp proximal
Rr637246	regulatory region 637246	760 bp proximal
Tmem72	transmembrane protein 72	Intron