rs229238966 SNP Detail

Summary

• ID
  rs229238966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21986186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTGGGTG TTTCCTTCCA AGTGATTTTG
  ATCAGCAATC CATTAGGGGA TCATGAAAAA AAAAAAATCT GGCTAAAAGG ATGAAAACTG
  AGTAAGTACA CAGAACTTTG AACTTGAAAC GGAATGAGAC CAAACGCAAG CAAAGCCCTG
  R
  CAGTAACCAC ATACAGCCAA ACTGCTATCC CCCTTTTTTA TGTTAAAAGC CGTGAATGCT
  AGCAGCAAAG TGGCAATTTA AAACTGAACG AAAGGAAGCA GCAGTTCTAC AACATAAAAG
  GCTGGGAGCG GGATGGCTTT AAAACCGGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321763919	CHEV_6_21936187	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229238966					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21986186 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17190	CpG island 17190			118 bp distal
Rr627034	regulatory region 627034			1086 bp distal
Rr627035	regulatory region 627035			261 bp distal
Rr627036	regulatory region 627036			within coordinates
Tssr1788	transcription start site region 1788			66 bp upstream
Tssr55139	transcription start site region 55139			215 bp downstream
Tssr55140	transcription start site region 55140			195 bp downstream
Tssr55141	transcription start site region 55141			37 bp downstream
Tssr55142	transcription start site region 55142			12 bp downstream
Tssr55143	transcription start site region 55143			within coordinates
Tssr55144	transcription start site region 55144			164 bp upstream
Tssr55145	transcription start site region 55145			191 bp upstream
Tssr55146	transcription start site region 55146			251 bp upstream
Tssr55147	transcription start site region 55147			700 bp upstream
Tssr55148	transcription start site region 55148			783 bp upstream