rs229236226 SNP Detail

Summary

• ID
  rs229236226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTACAAA TCATTTTGCT
  CCGCTGTTAG AAGGCGGCAG CTTTTAAGGC TGAGCCGAGA TGTTTGAAAG GTGGAACACC
  CTTGGCCATG AAATATGTTC TCCTTACGTG CCTCAGCCTT TCAAAGTTCT GTGCATTAGA
  GTCAGGAATT CCATTCTTCC TGGAGCTAAG CGTGGGGCCA GCTGTGTAAG TAAAGTTTTG
  Y
  TTTTCTTCTT AAACAACTTT TTCCCTCTAT TTAAAAATGT GAAGAAAAAG GCAAAAAAAA
  CAACAACAAA AAAAAAAACA ACAAAAAAAA ACCCACCAAA AAACCTAGAT ATTCTTTTCT
  TTCATTTTTG CTCTCTTTAG TGGAAAGAAA AGGAATAAAA AGTTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593252	MGP_WTSI_3_79689164	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229236226					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593252	MGP_WTSI_3_79689164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	815 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1710 bp downstream
Rr375226	regulatory region 375226	233 bp upstream
Rr578602	regulatory region 578602	1761 bp distal
Rr578603	regulatory region 578603	1968 bp distal
Rr578604	regulatory region 578604	1684 bp distal
Rr578605	regulatory region 578605	within coordinates
Rr578606	regulatory region 578606	592 bp proximal
Rr578607	regulatory region 578607	1112 bp proximal
Rr578608	regulatory region 578608	1561 bp proximal
Rr578609	regulatory region 578609	1610 bp proximal
Rr578610	regulatory region 578610	1650 bp proximal
Tssr29596	transcription start site region 29596	671 bp downstream
Tssr29597	transcription start site region 29597	650 bp downstream
Tssr29598	transcription start site region 29598	152 bp downstream
Tssr29599	transcription start site region 29599	123 bp downstream
Tssr29600	transcription start site region 29600	74 bp downstream
Tssr29601	transcription start site region 29601	45 bp downstream
Tssr29602	transcription start site region 29602	707 bp upstream
Tssr29603	transcription start site region 29603	798 bp upstream
Tssr29604	transcription start site region 29604	870 bp upstream
Tssr29605	transcription start site region 29605	939 bp upstream
Tssr29606	transcription start site region 29606	972 bp upstream
Tssr29607	transcription start site region 29607	1642 bp upstream
Tssr29608	transcription start site region 29608	1660 bp upstream
Tssr33752	transcription start site region 33752	921 bp downstream
Tssr33753	transcription start site region 33753	939 bp downstream
Tssr33754	transcription start site region 33754	1554 bp downstream