rs229213624 SNP Detail

Summary

• ID
  rs229213624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5530283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAAAAAAA AAAAAGAGTA GTAATGAACT
  GTGATGCTGT GTTCATCGGG TGGGCAACCG TTTACAAAGG AAACTAACCC TGCTGCTGGA
  CATGTGGGGC AAGCCACCTT TGGCACAACT GTGAATTGCT AGTGCCTTTG GAAAGCAACT
  R
  GAGTTAGCTG Ctacatacat acacatacat acatacatac atacatacat acatacacac
  acacacacac acacacacac acCCTTCCGT CATCTCAGGA AGTGTGCTTC TTGCTGCTCA
  TTGGCTCTTA TGGTGCAGCT CCTGACATGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321451365	CHEV_5_5480283	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229213624					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5530283 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Pttg1ip2	PTTG1IP family member 2	1140 bp upstream
Rr607007	regulatory region 607007	1462 bp proximal
Rr607008	regulatory region 607008	1477 bp proximal
Rr607009	regulatory region 607009	1534 bp proximal
Tssr45089	transcription start site region 45089	1094 bp downstream
Tssr45090	transcription start site region 45090	1268 bp upstream
Tssr50049	transcription start site region 50049	1223 bp upstream
Tssr50050	transcription start site region 50050	1208 bp upstream
Tssr50051	transcription start site region 50051	1176 bp upstream
Tssr50052	transcription start site region 50052	1147 bp upstream