rs229184400 SNP Detail

Summary

• ID
  rs229184400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141168872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATACCA AGCACGGATA
  AGGTTTTGTG TTAACAGTGT GGGTTGGAAA GATCTGCAAG GCAGGGTGTC TGCTTTAAAT
  GAGTTAAATC CTAATTAGGA AAAACAGCCA AAAGACGGGT ATAACTAATA ACTGCCCAAT
  TCTACAACTT TATGGTTGTT GTTGTTTGAG ACAGGTTCTC TCTTCATAGC CCTGACCATT
  Y
  TGGAGTCCCC AAGCTGGCTT TAAACTTACA GTGATTCTCC TGCTTCTGCC TCCTGAGTTC
  TGGGGTGACA AGCATAGCCC ACCACACCTA ACACTTCACA ACTTTGCAGT CTTGTTTACA
  TAACACTAAC TCTGCACAGA GATTTCTCTG ACAGACTTCA AGCTCTTATT CTTCTTTTGG
  GAAAATTATA GAGAAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992365	CHEV_3_141126075	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229184400					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141168872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1529 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	264 bp distal
Rr586319	regulatory region 586319	1615 bp proximal
Rr586320	regulatory region 586320	1871 bp proximal
Tssr1065	transcription start site region 1065	1584 bp upstream
Tssr35916	transcription start site region 35916	1464 bp downstream