rs229166377 SNP Detail

Summary

• ID
  rs229166377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108040259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GGGAAGGTCA TGCACCTGAC
  Y
  TGGCTATGCC AAAGGCTGAA GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321891470	CHEV_6_108013292	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229166377					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108040259 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	1595 bp upstream
Rr399805	regulatory region 399805	1901 bp upstream
Rr636028	regulatory region 636028	926 bp proximal
Rr636029	regulatory region 636029	1674 bp proximal
Rr636030	regulatory region 636030	2000 bp proximal
Setmar	SET domain without mariner transposase fusion	1747 bp upstream
Tssr58052	transcription start site region 58052	1737 bp upstream