rs229161171 SNP Detail

Summary

• ID
  rs229161171
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83750938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGAGA AGGCCAAAGT
  AGACGAGGTT GGTGAAAAGG CCCACGCCAA TCATGCTGGT GGGGAAACGC TCAAAGACGT
  AGAGGCCGAT CAGCACTGCT GTGGAGAACT AAAACAGGCA GAGGCGCTGG CTCAGGGGAC
  CTTTAGGCCT CCGGGACAGT CAGTCCCTGC CTGCTCTGCA CAGCGCTGTT ACAAATGCAC
  K
  TTGGTTTTCT CGGTTCACAG AAACCACACT CAGCTTTCAA AAAGGTGGTC TCTCTGAAGG
  CCACTTCTAA AACATTTTAG ACAGTGATCC AAAGTAAGAA AAAAAAAACA TTTTATACAG
  CACTCCACCA AACACATACC CAACGTGTGA CAGAGCGCAC ACTCACTTTG CCTGCTCTCG
  TTTTTACTGT TAGCACTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039036	MGP_WTSI_6_83723950	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229161171					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039036	MGP_WTSI_6_83723950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83750938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	1109 bp proximal
Gm52907	predicted gene, 52907	1929 bp upstream
Rr632937	regulatory region 632937	290 bp proximal
Rr632938	regulatory region 632938	1713 bp proximal
Rr632939	regulatory region 632939	1847 bp proximal
Rr632940	regulatory region 632940	1940 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1972 bp upstream
Tssr57375	transcription start site region 57375	1682 bp upstream
Tssr61705	transcription start site region 61705	1604 bp downstream
Tssr61706	transcription start site region 61706	1619 bp downstream
Tssr61707	transcription start site region 61707	1626 bp downstream
Tssr61708	transcription start site region 61708	1654 bp downstream
Tssr61709	transcription start site region 61709	1713 bp downstream
Tssr61710	transcription start site region 61710	1790 bp downstream
Tssr61711	transcription start site region 61711	1811 bp downstream