rs229141469 SNP Detail

Summary

• ID
  rs229141469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27257786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGTCATA TAGTTCTGTT
  TTTACTTTTT GTGGGAGCTA TTTCTGATTT CCCTGACTAT GAAGGCTACA CTCCTCCCTA
  CAGGATAGAA CGGCTCCTCC TCCTCCTCCT CCTCCTCCTC CTCCTCCTCC TCCTCTTCCC
  CTTCTACTTA GCCAGCATTT GTTTTTATTG CTTTGGTGAT ACCCATTTTG ACTGAGTCAA
  R
  GTAGAATTGT GACAGTTTTA TATATATATA TATATATATA TATATATATA TATATAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GCTGTTGCTC TCTCCAGACA AACCAGAAGA
  GGGCATCGGT TCCCATTACA GATGGTTGTG AGCCACCATG TGTTTGCTGG GAATGGAACT
  CAGAACCTCT GGAAGAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
ss357339747	MGP_WTSI_3_27102559	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ZALENDE/EiJ
rs229141469					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357339747	MGP_WTSI_3_27102559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27257786 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			1565 bp distal
Rr574366	regulatory region 574366			1477 bp proximal