rs229141448 SNP Detail

Summary

• ID
  rs229141448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104948422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCCTC TGCCTTATGA
  GTGCATGAAG TCCTCTTTCT TCTTTTTGAG ACAGAGTTTT GCTACGTAGC CCAGGTTGGC
  TTTTAATTTA TCTCTTTGCT TCAGTCCCTC AAGTACTGAT CCTTATAGGT GTAATCTACC
  ATGCTTGGCC TACCCATGAC AACAATCAGA AGTTCTGGGT ATCAAGCCGG GATGCACACG
  Y
  AGGCCACACC CCTCGCCTTA TGCACACACC CACACAGCGC CTCCTTAACT ACTTTGATGA
  TTTTGCCTGG GAAATGTGTT GCTGTGCCCT GCTCCGTCTC TGACTAACAC CCCAGCTCTG
  CTCCTTCTGG CCCGCACTAC ACTGTGCAGC TTGCTTCTCC ACAAAGCCCG TGCTCTGGAG
  CTGAAGTGAT CCTGTAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320861362	CHEV_3_104844024	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229141448					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104948422 () rs orientation: forward

Symbol	Name	Function Class
Cttnbp2nl	CTTNBP2 N-terminal like	Intron
Rr582653	regulatory region 582653	741 bp distal
Rr582654	regulatory region 582654	within coordinates