rs229134435 SNP Detail

Summary

• ID
  rs229134435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCTACCC ACTGCTGAGG ATGGGACCGA
  GGGCCGGGTC AGATGCGAGG CAAGCACACT AGCCCAGTCT CTAGGAAACA CCAGAGTATC
  AACAGTAAAT GTTAGGATTT CACAAGGAAG GAAGCATTAG AATTTAAAAT ATAAAATTCA
  R
  GCATTAGACA AAGGAGAACA ATAAAATGAT ATAAATCTGG AGGGATTTTT CACACAGCCT
  ATCTTTTTAG GTGTGCCTTT CCCATATTTT ATTAAACTCG AGTTGTTGTT TTAAAAAACA
  GCAGCATTAT CAAAGACACA TCTGTACAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812326	CHEV_6_67484028	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229134435					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	626 bp distal
Cpgi17512	CpG island 17512	616 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	728 bp upstream
Rr368087	regulatory region 368087	661 bp downstream
Rr631664	regulatory region 631664	1967 bp distal
Rr631666	regulatory region 631666	739 bp distal
Rr631667	regulatory region 631667	238 bp distal
Rr631668	regulatory region 631668	757 bp proximal
Rr631669	regulatory region 631669	1200 bp proximal
Rr631670	regulatory region 631670	1751 bp proximal
Rr631671	regulatory region 631671	1752 bp proximal
Rr631672	regulatory region 631672	1924 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	28 bp downstream
Tssr1867	transcription start site region 1867	1493 bp upstream
Tssr1868	transcription start site region 1868	1457 bp upstream
Tssr1869	transcription start site region 1869	696 bp upstream
Tssr1870	transcription start site region 1870	565 bp downstream
Tssr1871	transcription start site region 1871	216 bp downstream
Tssr1872	transcription start site region 1872	738 bp downstream
Tssr61254	transcription start site region 61254	371 bp upstream
Tssr61255	transcription start site region 61255	696 bp downstream
Tssr61256	transcription start site region 61256	1160 bp downstream
Tssr61257	transcription start site region 61257	1651 bp downstream
Tssr61258	transcription start site region 61258	1749 bp downstream
Tssr61259	transcription start site region 61259	1794 bp downstream