rs229130639 SNP Detail

Summary

• ID
  rs229130639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:94260001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCCGCT TCCCGGCGCA
  ACCCCGGCCC CAGCCCGCCA CGCAGGTGGG CGCACAGCCC ACAACCTCAC AACTTTGAGT
  GCATCTGGTC CGGGCCTCAA CTTTGGCTCA CAGCACTCGG AGCAAACGGC GCCCCCTCAG
  GCCTCCCCTC TTTTTCGGGG TGCGCCCCCC AAAGGCACGC CCCGTCTTAC CTTGTCTGAC
  R
  GCTTTGAAGG TGACGGCCTC CTTGCAGCTG TCGATGACTC CCAGCACGTC ATAGCGGGGC
  AAGCCGGACA CCCGGACCCC CTGCACCTCC AGCAGCAGCT CACCTTCGGC CAGCTTCGGC
  CCCTCGCCAC CGCCGGGAAG CCCCGCCGCC TCGGCCGCCG CCACCGCCCC CACGTACGGA
  AACTCCCCAT GCTCCGCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss369251510	MGP_WTSI_6_94233014	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229130639					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369251510	MGP_WTSI_6_94233014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94260001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17759	CpG island 17759			within coordinates
Gm31661	predicted gene, 31661			991 bp upstream
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr634854	regulatory region 634854			552 bp distal
Rr634855	regulatory region 634855			21 bp distal
Rr634856	regulatory region 634856			292 bp proximal
Rr634857	regulatory region 634857			887 bp proximal
Rr634858	regulatory region 634858			1057 bp proximal
Rr634859	regulatory region 634859			1558 bp proximal
Tssr62172	transcription start site region 62172			495 bp downstream
Tssr62173	transcription start site region 62173			555 bp downstream
Tssr62174	transcription start site region 62174			721 bp downstream
Tssr62175	transcription start site region 62175			780 bp downstream
Tssr62176	transcription start site region 62176			815 bp downstream
Tssr62177	transcription start site region 62177			828 bp downstream