rs229127902 SNP Detail

Summary

• ID
  rs229127902
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53770134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAACTCAT CAGCACTATT GTAATTTCTT
  CAGGAACAGA GTTAAGTGCA GAGAACATAA ATTTGGTTTT TCACCAAGCA AAATATTCCA
  AGCTATCAGA GAGGTGGCTA TCAGATTCCT GGGAGTTAGC AAAGAAACGA TCTTTaaaaa
  M
  aaaaaacaaa aaacaacaaa aaaaaCCTAG ACTACAGACT TTCGTCTGCA CACGAAATGA
  GTGGGTATGG CACTAGGGAG GCAAAAGTGA CAGAAAACTT TTAACTTTTA TTGTTGAAGG
  CACACTGCGG TACATCATCC AGAGGAAGAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320769924	CHEV_3_53666635	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229127902					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53770134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13168	CpG island 13168	651 bp proximal
Rr367439	regulatory region 367439	1224 bp upstream
Rr576756	regulatory region 576756	439 bp proximal
Rr576757	regulatory region 576757	1043 bp proximal
Tssr33277	transcription start site region 33277	1051 bp downstream
Ufm1	ubiquitin-fold modifier 1	Intron