rs229125547 SNP Detail

Summary

• ID
  rs229125547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34724305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACACAG ATCAAAGCCA
  CTCTCTGCAG CCACCTGCCT GGAAACCCAG CCAGACACTC CAGAACACAG GACAAGTGGG
  CACGTGCTTC CATTCTAAAC CCAACAAGTG GCCAGACTTA GGATCTAGAC ACAGCTGAGC
  TCCGGGATAG ATGTAGAATG GAGCGCCTGC GTCCTTCCCG AGGTCTAGGT CCAGCTCTGC
  Y
  GCCCTATCTC GATTCCTAGC CACCTGTTTC TACGGAGTTG GGAAACCTTA AGGACAGAAG
  CAAAGCTTTC CGCACCGGGA CAGCGCCGAT TCCGGCGTGC GCTCCGCTGT CCTCTGTCCG
  GTCTCCGCCC GCCCACATCC CGGGACCCAC GGGTGCTCAC CTCGCGGGGA CAGCTGCAAC
  GCTGGCGACG GCGAGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402329711	MGP_WTSI_19_34821395	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229125547					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402329711	MGP_WTSI_19_34821395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34724305 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	1381 bp downstream
Rr546785	regulatory region 546785	within coordinates
Rr546786	regulatory region 546786	374 bp proximal
Rr546787	regulatory region 546787	1167 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	Intron
Tssr156164	transcription start site region 156164	592 bp downstream
Tssr159005	transcription start site region 159005	195 bp downstream
Tssr159006	transcription start site region 159006	228 bp downstream
Tssr159007	transcription start site region 159007	289 bp downstream
Tssr159008	transcription start site region 159008	318 bp downstream
Tssr159009	transcription start site region 159009	386 bp downstream
Tssr159010	transcription start site region 159010	416 bp downstream
Tssr159011	transcription start site region 159011	529 bp downstream
Tssr159012	transcription start site region 159012	548 bp downstream
Tssr159013	transcription start site region 159013	578 bp downstream