rs229117397 SNP Detail

Summary

• ID
  rs229117397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165836100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCGGGGA CCCTCGGCTT
  GGTTGACAGA TCTCTGCTGC GCCAAAGCCT CAGCATTTGT TCCTGCAGGT TGTTGCAGAA
  ATGAGTTGCT GGAGCTAAGG GTGCATGCAT TCAGATCTTC AGCAGATACG GCTGTGGACT
  AACAGGGCAG TGCAAACCTC TGAGTTTGTG AGCCGTTTGT TCTTTTAAAA CCTTAAATGG
  Y
  TATCAAGTAT TCAGAATAGG TTTTTTCCAC ATCGGATACC CAACTGAAAA GGTCTGAAAA
  TACTGAAAAA GGAATCTCTT CCACTAGAAA CCCTGTCTGT GGCAATGACT GTTAGCATTT
  CTTGCAGTAA GTTTGGCTTT GGAACTAAAG ACTAAAGTAT TTTCATTAGA AACAAACCCC
  AGCTGGTATA TACTGAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356470151	MGP_WTSI_2_165819680	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229117397					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356470151	MGP_WTSI_2_165819680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165836100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12718	CpG island 12718	458 bp distal
Gm11464	predicted gene 11464	1663 bp upstream
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570095	regulatory region 570095	1674 bp distal
Rr570096	regulatory region 570096	1545 bp distal
Rr570097	regulatory region 570097	55 bp distal
Rr570098	regulatory region 570098	1163 bp distal
Rr570099	regulatory region 570099	654 bp distal
Rr570100	regulatory region 570100	369 bp proximal
Rr570101	regulatory region 570101	1865 bp proximal
Tssr21748	transcription start site region 21748	1561 bp downstream
Tssr21749	transcription start site region 21749	1513 bp downstream
Tssr21750	transcription start site region 21750	1493 bp downstream
Tssr21751	transcription start site region 21751	1454 bp downstream
Tssr27667	transcription start site region 27667	437 bp upstream