rs229070871 SNP Detail

Summary

• ID
  rs229070871
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141303182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGCATG TCCCCTCACA
  GGAGTCCCAA TGCACGTCAC CACTTTATCA GCTTCCCTTT AATTAATTCA TATATGTATA
  TATTTATATA ATTTGGTGCT GGGGACAGAA GCCAGTCAAG TACATACATG CTAAGTGTAT
  TCAAATCACT GCGACACCCC CCACCCCCAG TTACCCATAT ATTTAAAACG AAGCCTCATG
  T
  GGCTCTGGGT TCGATTCCTA GAATTCCAGA ATATAGGAGT TGGAGACAAG GGATATGAAG
  TCAAGGCAAT CCAGGACGAT ATAGTTAGTT CAAGGTCAGC CTGGGATACT CAGGACACTA
  TCTCACTGAA ACAAAACCCC CAAATAAAAA CAACCAACTC CCCCCACCCC AGACAAAAAC
  AAGACACAAG GAAAGAACAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388165	CHEV_4_141131786	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229070871					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141303182 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	191 bp downstream
Gm68503	predicted gene, 68503	697 bp upstream
Rr377309	regulatory region 377309	1894 bp downstream
Rr603811	regulatory region 603811	1690 bp distal
Rr603812	regulatory region 603812	708 bp distal
Rr603813	regulatory region 603813	207 bp distal
Rr603814	regulatory region 603814	278 bp distal
Rr603815	regulatory region 603815	1188 bp proximal
Tssr44332	transcription start site region 44332	934 bp downstream